Sorry this reply is so old, but for some reason we were not notified of it.
You may have to copy or move the Bibles in your jeff/Documents/BibleAnalyzer to the usr/share/bibleanalyzer folder to see if it will work. They will have to be sudo copied.
Actually we have not spent much time on the Linux version for quite a while. We don't even have a computer available with Ubuntu presently. The simple fact is the Linux version of Bible Analyzer is very rarely downloaded and often when it is, it is by someone with some other flavor of Linux, which it wasn't coded for, who can't get something to work, and then they complain to me or on some forum that Bible Analyzer Linux doesn't work. I simply do not have time for this.
(This does not refer to you, Jeff. Your post is relevent)
I say that to say this. Don't be surprised if v4.1 is the last Linux version, flaws and all.
Developer, Bible Analyzer
But to him that worketh not, but believeth on him that justifieth the ungodly, his faith is counted for righteousness. (Rom 4:5 AV)