Bible Analyzer 3.9.3 for Linux is on the website and here,http://www.BibleAnalyzer.com/bibleanalyzer_3.9-3_i386.deb
This version does not have the pesky title popups,
Will use the new TSKe in the Reference Panel (if available).
Plus (most of) the new 3.9 features
The tools and module folders are now lowercase.
If you have 3.7 installed, the best way to install without complications (hopefully) is.
Move your modules from the home/USER/.bibleanalyzer folder and then delete the .bibleanalyzer folder.
Do a "complete removal" of Bible Analyzer with Package Manager.
Delete the usr/share/bibleanalyzer folder (must be sudo user)
Run the .deb file above to install
Move your modules back to the home/USER/.bibleanalyzer folder.
You can try running the new .deb on top of a 3.7 installation, but you will still have to move your extra mods (if any) to the home/USER/.bibleanalyzer/modules folder (not "Modules").